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Manage software updates and AGNOS retained state through explicit manifests and update preferences. Co-authored-by: Daniel Koepping <elkoled@gmail.com> Co-authored-by: Prabhaav Pillai <prabhaav@msu.edu> Co-authored-by: firestarsdog <229254897+firestarsdog@users.noreply.github.com> Co-authored-by: dirwin31 <83434411+dirwin31@users.noreply.github.com>
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