onepilot/tinygrad_repo/test/external/external_test_datasets.py

from extra.datasets.kits19 import iterate, preprocess
from examples.mlperf.dataloader import batch_load_unet3d, batch_load_retinanet
from test.external.mlperf_retinanet.coco_utils import get_openimages
from test.external.mlperf_retinanet.openimages import postprocess_targets
from test.external.mlperf_retinanet.presets import DetectionPresetTrain, DetectionPresetEval
from test.external.mlperf_retinanet.model.transform import GeneralizedRCNNTransform
from test.external.mlperf_unet3d.kits19 import PytTrain, PytVal
from tinygrad.helpers import temp
from pathlib import Path
from pycocotools.coco import COCO

import json
import nibabel as nib
import numpy as np
import os
import PIL
import random
import tempfile
import torch
import unittest

class ExternalTestDatasets(unittest.TestCase):
  def _set_seed(self):
    np.random.seed(42)
    random.seed(42)
    torch.manual_seed(42)

class TestKiTS19Dataset(ExternalTestDatasets):
  def _create_samples(self, val, num_samples=2):
    self._set_seed()

    img, lbl = np.random.rand(190, 392, 392).astype(np.float32), np.random.randint(0, 100, size=(190, 392, 392)).astype(np.uint8)
    img, lbl = nib.Nifti1Image(img, np.eye(4)), nib.Nifti1Image(lbl, np.eye(4))
    dataset = "val" if val else "train"
    preproc_pth = Path(tempfile.gettempdir() + f"/{dataset}")

    for i in range(num_samples):
      os.makedirs(tempfile.gettempdir() + f"/case_000{i}", exist_ok=True)
      nib.save(img, temp(f"case_000{i}/imaging.nii.gz"))
      nib.save(lbl, temp(f"case_000{i}/segmentation.nii.gz"))

      preproc_img, preproc_lbl = preprocess(Path(tempfile.gettempdir()) / f"case_000{i}")
      preproc_img_pth, preproc_lbl_pth = temp(f"{dataset}/case_000{i}_x.npy"), temp(f"{dataset}/case_000{i}_y.npy")

      os.makedirs(preproc_pth, exist_ok=True)
      np.save(preproc_img_pth, preproc_img, allow_pickle=False)
      np.save(preproc_lbl_pth, preproc_lbl, allow_pickle=False)

    return preproc_pth, list(preproc_pth.glob("*_x.npy")), list(preproc_pth.glob("*_y.npy"))

  def _create_ref_dataloader(self, preproc_img_pths, preproc_lbl_pths, val):
    if val:
      dataset = PytVal(preproc_img_pths, preproc_lbl_pths)
    else:
      dataset = PytTrain(preproc_img_pths, preproc_lbl_pths, patch_size=(128, 128, 128), oversampling=0.4)

    return iter(dataset)

  def _create_tinygrad_dataloader(self, preproc_pth, val, batch_size=1, shuffle=False, seed=42, use_old_dataloader=False):
    if use_old_dataloader:
      dataset = iterate(list(Path(tempfile.gettempdir()).glob("case_*")), preprocessed_dir=preproc_pth, val=val, shuffle=shuffle, bs=batch_size)
    else:
      dataset = batch_load_unet3d(preproc_pth, batch_size=batch_size, val=val, shuffle=shuffle, seed=seed)

    return iter(dataset)

  @unittest.skip("flaky")
  def test_training_set(self):
    preproc_pth, preproc_img_pths, preproc_lbl_pths = self._create_samples(False)
    ref_dataset = self._create_ref_dataloader(preproc_img_pths, preproc_lbl_pths, False)
    tinygrad_dataset = self._create_tinygrad_dataloader(preproc_pth, False)

    for ref_sample, tinygrad_sample in zip(ref_dataset, tinygrad_dataset):
      self._set_seed()

      np.testing.assert_equal(tinygrad_sample[0][:, 0].numpy(), ref_sample[0])
      np.testing.assert_equal(tinygrad_sample[1][:, 0].numpy(), ref_sample[1])

  def test_validation_set(self):
    preproc_pth, preproc_img_pths, preproc_lbl_pths = self._create_samples(True)
    ref_dataset = self._create_ref_dataloader(preproc_img_pths, preproc_lbl_pths, True)
    tinygrad_dataset = self._create_tinygrad_dataloader(preproc_pth, True, use_old_dataloader=True)

    for ref_sample, tinygrad_sample in zip(ref_dataset, tinygrad_dataset):
      np.testing.assert_equal(tinygrad_sample[0][:, 0], ref_sample[0])
      np.testing.assert_equal(tinygrad_sample[1], ref_sample[1])

class TestOpenImagesDataset(ExternalTestDatasets):
  @classmethod
  def setUpClass(cls):
    cls.img_mean = [0.485, 0.456, 0.406]
    cls.img_std = [0.229, 0.224, 0.225]
    cls.img_size = (800, 800)

  def _create_samples(self, subset):
    os.makedirs((base_dir := Path(tempfile.gettempdir() + "/openimages")) / f"{subset}/data", exist_ok=True)
    os.makedirs(base_dir / Path(f"{subset}/labels"), exist_ok=True)

    lbls, img_size = ["cls_1", "cls_2"], (447, 1024)
    cats = [{"id": i, "name": c, "supercategory": None} for i, c in enumerate(lbls)]
    imgs = [
      {
        "id": i, "file_name": f"img_{i}.jpg",
        "height": img_size[0], "width": img_size[1],
        "subset": subset, "license": None, "coco_url": None
      }
      for i in range(len(lbls))
    ]
    annots = [
      {
        "id": i, "image_id": i,
        "category_id": 0, "bbox": [23.217183744, 31.75409775, 964.1241282560001, 326.09017434000003],
        "area": 314391.4050683996, "IsOccluded": 0,
        "IsInside": 0, "IsDepiction": 0,
        "IsTruncated": 0, "IsGroupOf": 0,
        "iscrowd": 0
      }
      for i in range(len(lbls))
    ]
    info = {"dataset": "openimages_mlperf", "version": "v6"}
    coco_annotations = {"info": info, "licenses": [], "categories": cats, "images": imgs, "annotations": annots}

    with open(ann_file:=base_dir / Path(f"{subset}/labels/openimages-mlperf.json"), "w") as fp:
      json.dump(coco_annotations, fp)

    for i in range(len(lbls)):
      img = PIL.Image.new("RGB", img_size[::-1])
      img.save(base_dir / Path(f"{subset}/data/img_{i}.jpg"))

    return base_dir, ann_file

  def _create_ref_dataloader(self, base_dir, ann_file, subset):
    self._set_seed()
    transforms = DetectionPresetTrain("hflip") if subset == "train" else DetectionPresetEval()
    return iter(get_openimages(ann_file.stem, base_dir, subset, transforms))

  def _create_tinygrad_dataloader(self, base_dir, ann_file, subset, batch_size=1, seed=42):
    return iter(batch_load_retinanet(COCO(ann_file), subset == "validation", base_dir, batch_size=batch_size, shuffle=False, seed=seed))

  def _normalize_img(self, img):
    return ((img / 255.0) - np.array(self.img_mean)) / np.array(self.img_std)

  def test_training_set(self):
    base_dir, ann_file = self._create_samples((subset:="train"))
    transform = GeneralizedRCNNTransform(self.img_size, self.img_mean, self.img_std)
    anchors = torch.ones((120087, 4))

    tinygrad_dataloader = self._create_tinygrad_dataloader(base_dir, ann_file, subset)
    ref_dataloader = self._create_ref_dataloader(base_dir, ann_file, subset)

    for ((tinygrad_img, tinygrad_boxes, tinygrad_labels, _, _, _), (ref_img, ref_tgt)) in zip(tinygrad_dataloader, ref_dataloader):
      ref_img, ref_tgt = transform(ref_img.unsqueeze(0), [ref_tgt])
      ref_tgt = postprocess_targets(ref_tgt, anchors.unsqueeze(0))
      ref_boxes, ref_labels = ref_tgt[0]["boxes"], ref_tgt[0]["labels"]

      np.testing.assert_allclose(self._normalize_img(tinygrad_img.numpy()), ref_img.tensors.transpose(1, 3).numpy(), rtol=1e-6)
      np.testing.assert_equal(tinygrad_boxes[0].numpy(), ref_boxes.numpy())
      np.testing.assert_equal(tinygrad_labels[0].numpy(), ref_labels.numpy())

  def test_validation_set(self):
    base_dir, ann_file = self._create_samples((subset:="validation"))
    transform = GeneralizedRCNNTransform(self.img_size, self.img_mean, self.img_std)

    tinygrad_dataloader = self._create_tinygrad_dataloader(base_dir, ann_file, subset)
    ref_dataloader = self._create_ref_dataloader(base_dir, ann_file, "val")

    for ((tinygrad_img, _, _, _), (ref_img, _)) in zip(tinygrad_dataloader, ref_dataloader):
      ref_img, _ = transform(ref_img.unsqueeze(0))
      np.testing.assert_allclose(self._normalize_img(tinygrad_img.numpy()), ref_img.tensors.transpose(1, 3).numpy(), rtol=1e-6)

if __name__ == '__main__':
  unittest.main()